Array< T > Class Template Reference

#include <Array.h>

Inheritance diagram for Array< T >:

Collaboration diagram for Array< T >:

Public Types
typedef NumTypeTraits< T > ::T_Scalar	T_Scalar
typedef NumTypeTraits< T > ::T_BuiltIn	T_BuiltIn

Public Member Functions
	Array (const int length)
	Array (Array &parent, const int offset, const int length)
virtual	~Array ()
void	resize (const int newLength)
	DEFINE_TYPENAME ("Array<"+NumTypeTraits< T >::getTypeName()+">")
virtual int	getDimension () const
int	getLength () const
virtual PrimType	getPrimType () const
virtual void	getShape (int *shp) const
T &	operator[] (int n)
const T &	operator[] (int n) const
void	operator= (const T &x)
void	operator= (const Array &o)
virtual ArrayBase &	operator+= (const ArrayBase &obase)
virtual ArrayBase &	operator-= (const ArrayBase &obase)
virtual ArrayBase &	operator/= (const ArrayBase &obase)
virtual void	setMax (const ArrayBase &obase)
virtual ArrayBase &	safeDivide (const ArrayBase &obase)
virtual ArrayBase &	normalize (const ArrayBase &obase)
virtual ArrayBase &	operator*= (const ArrayBase &obase)
virtual bool	operator< (const double tolerance) const
virtual void	print (ostream &os) const
virtual ArrayBase &	saxpy (const ArrayBase &alphabase, const ArrayBase &xbase)
virtual ArrayBase &	msaxpy (const ArrayBase &alphabase, const ArrayBase &xbase)
virtual void *	getData () const
virtual int	getDataSize () const
virtual void	zero ()
void	disownData () const
virtual shared_ptr< ArrayBase >	dotWith (const ArrayBase &abase, const int lengthToUse) const
virtual shared_ptr< ArrayBase >	getOneNorm (const int lengthToUse) const
virtual shared_ptr< ArrayBase >	reduceSum () const
virtual void	setSum (const ArrayBase &sumBase)
virtual void	scatter (ArrayBase &other_, const ArrayBase &indices_, const int offset=0) const
virtual void	gather (const ArrayBase &other_, const ArrayBase &indices_, const int offset=0)
virtual shared_ptr< Array >	getSubset (const Array< int > &indices)
virtual void	setSubsetFromSubset (const ArrayBase &other_, const ArrayBase &fromIndices_, const ArrayBase &toIndices_)
virtual void	copyFrom (const IContainer &oc)
virtual void	copyPartial (const IContainer &oc, const int iBeg, const int iEnd)
virtual void	zeroPartial (const int iBeg, const int iEnd)
virtual void	limit (const double min, const double max)
virtual shared_ptr< ArrayBase >	operator- () const
virtual void	inject (IContainer &coarseI, const IContainer &coarseIndexI, const int length) const
virtual void	correct (const IContainer &coarseI, const IContainer &coarseIndexI, const IContainer *scaleI, const int length)
virtual shared_ptr< IContainer >	newClone () const
virtual shared_ptr< ArrayBase >	newSizedClone (const int size) const
virtual shared_ptr< IContainer >	newCopy () const
virtual shared_ptr< ArrayBase >	createOffsetArray (const int offset, const int length)
Public Member Functions inherited from ArrayBase
	ArrayBase ()
virtual	~ArrayBase ()
Public Member Functions inherited from IContainer
	IContainer ()
virtual	~IContainer ()
IContainer &	operator= (const IContainer &oc)

Private Member Functions
	Array (const Array &)

Private Attributes
int	_length
T *	_data
bool	_ownData

Detailed Description

template<class T>
class Array< T >

Definition at line 14 of file Array.h.

Member Typedef Documentation

template<class T>

typedef NumTypeTraits<T>::T_BuiltIn Array< T >::T_BuiltIn

Definition at line 20 of file Array.h.

template<class T>

typedef NumTypeTraits<T>::T_Scalar Array< T >::T_Scalar

Definition at line 19 of file Array.h.

Constructor & Destructor Documentation

template<class T>

Array< T >::Array ( const int  length )

inlineexplicit

Definition at line 22 of file Array.h.

Referenced by Array< Vector< int, 2 > >::createOffsetArray(), Array< Vector< int, 2 > >::dotWith(), Array< Vector< int, 2 > >::getOneNorm(), Array< Vector< int, 2 > >::getSubset(), Array< Vector< int, 2 > >::newClone(), Array< Vector< int, 2 > >::newCopy(), Array< Vector< int, 2 > >::newSizedClone(), and Array< Vector< int, 2 > >::operator-().

                                   :
    ArrayBase(),
    _length(length),
    _data(new T[length]),
    _ownData(true)
  {
    logCtorVerbose("of   length %d" , _length);
  }

template<class T>

Array< T >::Array ( Array< T > &  parent, const int  offset, const int  length  )

inline

Definition at line 33 of file Array.h.

                                                           :
    ArrayBase(),
    _length(length),
    _data(parent._data+offset),
    _ownData(false)
  {
    logCtorVerbose("with offset %d and length %d" , offset, _length);
  }

template<class T>

virtual Array< T >::~Array ( )

inlinevirtual

Definition at line 43 of file Array.h.

  {
    if (_ownData)
    {
        logDtorVerbose("of length %d with own data" , _length);
        delete [] _data;
    }
    else
    {
        logDtorVerbose("of length %d with offset data" , _length);
    }
  }

template<class T>

Array< T >::Array ( const Array< T > &  )

private

Member Function Documentation

template<class T>

virtual void Array< T >::copyFrom ( const IContainer &  oc )

inlinevirtual

Implements ArrayBase.

Definition at line 383 of file Array.h.

Referenced by DensityOfStates< T >::addMode(), DensityOfStates< T >::binEntireKspace(), DensityOfStates< T >::copyDOS(), DensityOfStates< T >::mergeBins(), and DensityOfStates< T >::refineBins().

  {
    const Array& other = dynamic_cast<const Array&>(oc);
    operator=(other);
  }

template<class T>

virtual void Array< T >::copyPartial ( const IContainer &  oc, const int  iBeg, const int  iEnd  )

inlinevirtual

Implements ArrayBase.

Definition at line 390 of file Array.h.

  {
    const Array& other = dynamic_cast<const Array&>(oc);
    for(int i=iBeg;i<iEnd;i++)
      _data[i] = other._data[i];
  }

template<class T>

virtual void Array< T >::correct ( const IContainer &  coarseI, const IContainer &  coarseIndexI, const IContainer *  scaleI, const int  length  )

inlinevirtual

Implements ArrayBase.

Definition at line 439 of file Array.h.

  {
    const Array& coarse = dynamic_cast<const Array&>(coarseI);
    const Array<int>& coarseIndex = dynamic_cast<const Array<int>& >(coarseIndexI);

    if (scaleI)
    {
        const Array& scaleArray =
          dynamic_cast<const Array&>(*scaleI);
        if (scaleArray.getLength() == 1)
        {
            const T& scale = scaleArray[0];
            //cout << "correction scale" << scale << endl;

            for(int i=0; i<length; i++)
              _data[i] += coarse[coarseIndex[i]]*scale;

        }
        else
          throw CException("invalid scale array");
    }
    else
    {
        for(int i=0; i<length; i++)
          if (coarseIndex[i]>=0)
            _data[i] += coarse[coarseIndex[i]];
    }
  }

template<class T>

virtual shared_ptr<ArrayBase> Array< T >::createOffsetArray ( const int  offset, const int  length  )

inlinevirtual

Implements ArrayBase.

Definition at line 491 of file Array.h.

  {
    return shared_ptr<Array>(new Array(*this,offset,length));
  }

template<class T>

Array< T >::DEFINE_TYPENAME

(

"Array<"+NumTypeTraits< T >::getTypeName()+">"

)

template<class T>

void Array< T >::disownData ( ) const

inline

Definition at line 286 of file Array.h.

{_ownData = false;}

template<class T>

virtual shared_ptr<ArrayBase> Array< T >::dotWith ( const ArrayBase &  abase, const int  lengthToUse  ) const

inlinevirtual

Implements ArrayBase.

Definition at line 291 of file Array.h.

  {
    const Array& a = dynamic_cast<const Array&>(abase);
    T sum(NumTypeTraits<T>::getZero());
    for(int i=0; i<lengthToUse; i++)
      NumTypeTraits<T>::accumulateDotProduct(sum,_data[i],a._data[i]);
    shared_ptr<Array> nPtr(new Array(1));
    (*nPtr)[0] = sum;
    return nPtr;
  }

template<class T>

virtual void Array< T >::gather ( const ArrayBase &  other_, const ArrayBase &  indices_, const int  offset = 0  )

inlinevirtual

Implements ArrayBase.

Definition at line 347 of file Array.h.

  {
    const Array<int>& indices = dynamic_cast<const Array<int>& >(indices_);
    const Array& other = dynamic_cast<const Array& >(other_);
    for(int ii=0; ii<indices.getLength(); ii++)
      _data[indices[ii]] = other[offset+ii];
  }

template<class T>

virtual void* Array< T >::getData ( ) const

inlinevirtual

Implements ArrayBase.

Definition at line 275 of file Array.h.

Referenced by KineticModel< T >::computeIBFaceDsf(), COMETModel< T >::computeIBFaceDsf(), KineticModel< T >::computeSolidFacePressure(), COMETModel< T >::computeSolidFacePressure(), NcDataWriter::connectivities(), SpikeMatrix< T_Diag, T_OffDiag, X >::exchange_gTgB(), SpikeMatrix< T_Diag, T_OffDiag, X >::exchange_reducedSol(), COMETESBGKDiscretizer< T >::findResid(), COMETESBGKDiscretizer< T >::findResidFine(), CRMatrix< T_Diag, T_OffDiag, X >::getDiagData(), CRMatrix< T_Diag, T_OffDiag, X >::getOffDiagData(), MeshPartitioner::level1_scatter_gather_cells(), FluentReader::readVectorData(), DirectSolver::solve(), ScalarArrayWriter< T >::write(), and VectorArrayWriter< T, N >::write().

{return  _data;}

template<class T>

virtual int Array< T >::getDataSize ( ) const

inlinevirtual

Implements ArrayBase.

Definition at line 276 of file Array.h.

Referenced by SpikeMatrix< T_Diag, T_OffDiag, X >::exchange_gTgB(), SpikeMatrix< T_Diag, T_OffDiag, X >::exchange_reducedSol(), CRMatrix< T_Diag, T_OffDiag, X >::getDiagDataSize(), CRMatrix< T_Diag, T_OffDiag, X >::getOffDiagDataSize(), and Array< Vector< int, 2 > >::zero().

  {
    return  _length*NumTypeTraits<T>::getDataSize();
  }

template<class T>

virtual int Array< T >::getDimension ( ) const

inlinevirtual

Implements ArrayBase.

Definition at line 82 of file Array.h.

  {
    return NumTypeTraits<T>::getDimension() + 1;
  };

template<class T>

int Array< T >::getLength ( ) const

inlinevirtual

Implements ArrayBase.

Definition at line 87 of file Array.h.

Referenced by Mesh::addCRConn(), COMETInterface< T >::addFAS(), ScatteringKernel< T >::addFreqs(), DensityOfStates< T >::addMode(), COMETDiscretizer< T >::ArrayAbs(), COMETESBGKDiscretizer< T >::ArrayAbs(), COMETModel< T >::binwiseHeatFluxIntegral(), COMETModel< T >::calcBandFlux(), COMETModel< T >::calcBandRelEnergy(), Kspace< T >::calcBandTemp(), COMETModel< T >::calcBandTemps(), DensityOfStates< T >::calcBinFlux(), COMETModel< T >::calcModeFlux(), checkIBFaces(), Mesh::COMETfindCommonFaces(), CRMatrix< T_Diag, T_OffDiag, X >::compute_ILU0(), NcDataWriter::connectivities(), DensityOfStates< T >::copyDOS(), Array< Vector< int, 2 > >::correct(), ScatteringKernel< T >::correctDetailedBalance(), COMETModel< T >::correctSingleNeighbor(), Mesh::countCRConn(), MeshAssembler::countInterfaceNodes(), MeshPartitioner::CRConnectivityPrint(), Mesh::CRConnectivityPrint(), IBManager::CRConnectivityPrintFile(), MeshPartitioner::CRConnectivityPrintFile(), Mesh::CRConnectivityPrintFile(), FluentReader::createMesh(), Mesh::createRowColSiteCRConn(), Mesh::createScatterGatherCountsBuffer(), CRMatrix< T_Diag, T_OffDiag, X >::createScatterGatherCountsBuffer(), Mesh::createScatterGatherIndicesBuffer(), CRMatrix< T_Diag, T_OffDiag, X >::createScatterGatherIndicesBuffer(), CRMatrix< T_Diag, T_OffDiag, X >::createScatterGatherValuesBBuffer(), GradientMatrix< T_Scalar >::createScatterGatherValuesBuffer(), CRMatrix< T_Diag, T_OffDiag, X >::createScatterGatherValuesCRMtrxBuffer(), Kspace< T >::createSyncGather(), Field::createSyncGatherArrays(), MultiField::createSyncGatherArrays(), Field::createSyncGatherArraysLevel1(), MultiField::createSyncGatherArraysLevel1(), Field::createSyncGatherArraysVectorFields(), Field::createSyncGatherArraysVectorFieldsLevel1(), MeshPartitioner::DEBUG_faceCells_faceNodes(), MeshDismantler::debug_gather_mappers(), MeshPartitioner::DEBUG_level1_scatter_gather_cells(), MeshPartitioner::DEBUG_local_global(), MeshAssembler::debug_localNodeToGlobal(), MeshAssembler::debug_localToGlobal_mappers(), PartMesh::debug_print(), MeshDismantler::debug_scatter_mappers(), MeshAssembler::debug_sync_localToGlobal_mappers(), SpikeMatrix< T_Diag, T_OffDiag, X >::denseMtrxLU(), COMETInterface< T >::Distribute(), COMETInterface< T >::DistributeResid(), PartMesh::dumpTecplot(), CRMatrix< T_Diag, T_OffDiag, X >::eliminateRowGhost(), DensityOfStates< T >::findBin(), Grid::findNeighbors(), Kspace< T >::findTransmission(), COMETModel< T >::FinishCoarseMesh(), Array< Vector< int, 2 > >::gather(), Mesh::getCellCells2(), FluentReader::getCommonNodeMap(), MeshDismantler::getGatherArrays(), FluentReader::getGhostCellMap(), GradientMatrix< T_Scalar >::getGradient(), MeshAssembler::getInnerNodesCount(), CRConnectivity::getLocalizedSubset(), CRConnectivity::getLocalizedSubsetOfFaceCells(), MeshDismantler::getScatterArrays(), FlowModel< T >::Impl::getStressTensor(), CRConnectivity::getSubset(), Array< Vector< int, 2 > >::getSubset(), ScatteringKernel< T >::getTypeIIsource(), ScatteringKernel< T >::getTypeIsource(), KSearchTree::KSearchTree(), CRConnectivity::localize(), COMETInterface< T >::makeDMMcoeffs(), DensityOfStates< T >::makeDMMreflection(), DensityOfStates< T >::makeDMMtransmission(), COMETInterface< T >::makeEquilibriumArray(), COMETInterface< T >::makeValueArray(), DensityOfStates< T >::mergeBins(), Mesh::Mesh(), PartMesh::mesh_tecplot(), MeshPartitioner::mesh_tecplot(), PartMesh::mesh_xdmfplot(), MeshPartitioner::mesh_xdmfplot(), ArrowHeadMatrix< X, K >::multiply(), SquareMatrix< T, N >::multiply(), KSConnectivity< T >::multiplyOther(), KSConnectivity< T >::multiplySelf(), MeshPartitioner::preserve_cell_order(), DensityOfStates< T >::refineBins(), CRConnectivity::reorder(), DensityOfStates< T >::saveNormDOS(), COMETDiscretizer< T >::scaledResid(), Array< Vector< int, 2 > >::scatter(), MeshAssembler::setCellsSite(), DensityOfStates< T >::setDensity(), SpikeStorage::setGlobalIndices(), DensityOfStates< T >::setMids(), FVMParticles::setParticles(), Array< Vector< int, 2 > >::setSubsetFromSubset(), Array< Vector< int, 2 > >::setSum(), COMETModel< T >::smooth(), DensityOfStates< T >::sumOutgoing(), Kspace< T >::syncGather(), Field::syncGatherVectorFields(), Field::syncGatherVectorFieldsLevel1(), MultiFieldMatrix::syncGhostCoarsening(), COMETModel< T >::syncGhostCoarsening(), CRMatrix< T_Diag, T_OffDiag, X >::syncIndices(), Field::syncScatter(), MultiField::syncScatter(), Kspace< T >::syncScatter(), Field::syncScatterLevel1(), MultiField::syncScatterLevel1(), Field::syncScatterVectorFields(), Field::syncScatterVectorFieldsLevel1(), GradientMatrix< T_Scalar >::syncValues(), TDMA(), StructureDeformationModel< T >::updateBoundaryMesh(), ScatteringKernel< T >::updateSource(), ScatteringKernel< T >::updateSource2(), ScatteringKernel< T >::updateSourceTerm(), ScatteringKernel< T >::updateSourceTermTest(), Kspace< T >::weightArray(), ScalarArrayWriter< T >::write(), and VectorArrayWriter< T, N >::write().

{return _length;}

template<class T>

virtual shared_ptr<ArrayBase> Array< T >::getOneNorm ( const int  lengthToUse ) const

inlinevirtual

Implements ArrayBase.

Definition at line 303 of file Array.h.

  {
    T sum(NumTypeTraits<T>::getZero());
    for(int i=0; i<lengthToUse; i++)
      NumTypeTraits<T>::accumulateOneNorm(sum,_data[i]);
    shared_ptr<Array> nPtr(new Array(1));
    (*nPtr)[0] = sum;
    return nPtr;
  }

template<class T>

virtual PrimType Array< T >::getPrimType ( ) const

inlinevirtual

Implements ArrayBase.

Definition at line 89 of file Array.h.

  {
    return NumTypeTraits<T>::getPrimType();
  }

template<class T>

virtual void Array< T >::getShape ( int *  shp ) const

inlinevirtual

Implements ArrayBase.

Definition at line 94 of file Array.h.

  {
    *shp = _length;
    NumTypeTraits<T>::getShape(shp+1);
  }

template<class T>

virtual shared_ptr<Array> Array< T >::getSubset ( const Array< int > &  indices )

inlinevirtual

Definition at line 356 of file Array.h.

  {
    shared_ptr<Array> subPtr(new Array(indices.getLength()));
    Array& sub = *subPtr;

    for(int ii=0; ii<indices.getLength(); ii++)
    {
        sub[ii] = _data[indices[ii]];
    }

    return subPtr;
  }

template<class T>

virtual void Array< T >::inject ( IContainer &  coarseI, const IContainer &  coarseIndexI, const int  length  ) const

inlinevirtual

Implements ArrayBase.

Definition at line 428 of file Array.h.

  {
    Array& coarse = dynamic_cast<Array&>(coarseI);
    const Array<int>& coarseIndex = dynamic_cast<const Array<int>& >(coarseIndexI);

    for(int i=0; i<length; i++)
      if (coarseIndex[i]>=0)
        coarse[coarseIndex[i]] += _data[i];
  }

template<class T>

virtual void Array< T >::limit ( const double  min, const double  max  )

inlinevirtual

Reimplemented from ArrayBase.

Definition at line 404 of file Array.h.

  {
    if (_length == 1)
    {
        ArrayScalarTraits<T>::limit(_data[0],min, max);
    }
    else
      throw CException("invalid array for limit");
  }

template<class T>

virtual ArrayBase& Array< T >::msaxpy ( const ArrayBase &  alphabase, const ArrayBase &  xbase  )

inlinevirtual

Implements ArrayBase.

Definition at line 260 of file Array.h.

  {
    const Array& alpha = dynamic_cast<const Array& >(alphabase);
    const Array& x = dynamic_cast<const Array& >(xbase);
    
    if (alpha._length == 1 && x._length == _length)
    {
        for(int i=0;i<_length;i++)
          _data[i] -= alpha._data[0]*x._data[i];
    }
    else
      throw CException("invalid arrays for msaxpy");          
    return *this;
  }

template<class T>

virtual shared_ptr<IContainer> Array< T >::newClone ( ) const

inlinevirtual

Implements IContainer.

Definition at line 470 of file Array.h.

Referenced by CRMatrix< T_Diag, T_OffDiag, X >::iluSolve().

  {
    return shared_ptr<Array>(new Array(_length));
  }

template<class T>

virtual shared_ptr<IContainer> Array< T >::newCopy ( ) const

inlinevirtual

Implements IContainer.

Definition at line 483 of file Array.h.

Referenced by MovingMeshModel< T >::advance(), PlateDeformationModel< T >::init(), StructureDeformationModel< T >::init(), MovingMeshModel< T >::init(), and FlowModel< T >::Impl::solveMomentum().

  {
    shared_ptr<Array> c(new Array(_length));
    *c = *this;
    return c;
  }

template<class T>

virtual shared_ptr<ArrayBase> Array< T >::newSizedClone ( const int  size ) const

inlinevirtual

Implements ArrayBase.

Definition at line 476 of file Array.h.

  {
    return shared_ptr<Array>(new Array(size));
  }

template<class T>

virtual ArrayBase& Array< T >::normalize ( const ArrayBase &  obase )

inlinevirtual

Implements ArrayBase.

Definition at line 186 of file Array.h.

  {
    const Array& o = dynamic_cast<const Array& >(obase);
    if (_length == 1 && o._length==1)
    {
        for(int i=0;i<_length;i++)
          NumTypeTraits<T>::normalize(_data[i], o._data[i]);
    }
    else
      throw CException("invalid array for normalize");          
    return *this;
  }

template<class T>

virtual ArrayBase& Array< T >::operator*= ( const ArrayBase &  obase )

inlinevirtual

Implements ArrayBase.

Definition at line 200 of file Array.h.

  {
    const Array& o = dynamic_cast<const Array& >(obase);
    if (o._length == 1)
    {
        for(int i=0;i<_length;i++)
          _data[i] *= o._data[0];
    }
    else if (o._length == _length)
    {
        for(int i=0;i<_length;i++)
          _data[i] *= o._data[i];
    }
    else
      throw CException("invalid array for operator *=");          
    return *this;
  }

template<class T>

virtual ArrayBase& Array< T >::operator+= ( const ArrayBase &  obase )

inlinevirtual

Implements ArrayBase.

Definition at line 117 of file Array.h.

  {
    const Array& o = dynamic_cast<const Array& >(obase);
    if (o._length == _length)
    {
        for(int i=0;i<_length;i++)
          _data[i] += o._data[i];
    }
    else
      throw CException("invalid array for operator +=");          
    return *this;
  }

template<class T>

virtual shared_ptr<ArrayBase> Array< T >::operator- ( ) const

inlinevirtual

Reimplemented from ArrayBase.

Definition at line 415 of file Array.h.

  {
    if (_length == 1)
    {
        Array* nPtr(new Array(1));
        (*nPtr)[0] = -_data[0];
        return shared_ptr<ArrayBase>(nPtr);
    }
    throw CException("invalid  array for operator-");
  }

template<class T>

virtual ArrayBase& Array< T >::operator-= ( const ArrayBase &  obase )

inlinevirtual

Implements ArrayBase.

Definition at line 130 of file Array.h.

  {
    const Array& o = dynamic_cast<const Array& >(obase);
    if (o._length == _length)
    {
        for(int i=0;i<_length;i++)
          _data[i] -= o._data[i];
    }
    else
      throw CException("invalid array for operator -=");          
    return *this;
  }

template<class T>

virtual ArrayBase& Array< T >::operator/= ( const ArrayBase &  obase )

inlinevirtual

Implements ArrayBase.

Definition at line 143 of file Array.h.

  {
    const Array& o = dynamic_cast<const Array& >(obase);
    if (o._length == 1)
    {
        for(int i=0;i<_length;i++)
          _data[i] /= o._data[0];
    }
    else if (o._length == _length)
    {
        for(int i=0;i<_length;i++)
          _data[i] /= o._data[i];
    }
    else
      throw CException("invalid array for operator /=");          
    return *this;
  }

template<class T>

virtual bool Array< T >::operator< ( const double  tolerance ) const

inlinevirtual

Implements ArrayBase.

Definition at line 218 of file Array.h.

  {
    if (_length == 1)
    {
        return (_data[0] <tolerance);
    }
    else
      throw CException("invalid array for operator<");          
  }

template<class T>

void Array< T >::operator= ( const T &  x )

inline

Definition at line 104 of file Array.h.

Referenced by Array< Vector< int, 2 > >::copyFrom().

  {
    for(int i=0;i<_length;i++)
      _data[i] = x;
  }

template<class T>

void Array< T >::operator= ( const Array< T > &  o )

inline

Definition at line 110 of file Array.h.

  {
    for(int i=0;i<_length;i++)
      _data[i] = o._data[i];
  }

template<class T>

T& Array< T >::operator[] ( int  n )

inline

Definition at line 101 of file Array.h.

{return _data[n];}

template<class T>

const T& Array< T >::operator[] ( int  n ) const

inline

Definition at line 102 of file Array.h.

{return _data[n];}

template<class T>

virtual void Array< T >::print ( ostream &  os ) const

inlinevirtual

Implements ArrayBase.

Definition at line 228 of file Array.h.

  {
    if (_length > 0)
    {
       for ( int i = 0; i < _length; i++ )
         if ( i < _length-1)
            os <<_data[i] << endl;
         else 
            os <<_data[i];
    }
    else
      throw CException("invalid array for print");          
  }

template<class T>

virtual shared_ptr<ArrayBase> Array< T >::reduceSum ( ) const

inlinevirtual

Implements ArrayBase.

Definition at line 314 of file Array.h.

  {
    T_Scalar sum(NumTypeTraits<T_Scalar>::getZero());
    for(int i=0; i<_length; i++)
      NumTypeTraits<T>::reduceSum(sum,_data[i]);
    shared_ptr<Array<T_Scalar> > nPtr(new Array<T_Scalar>(1));
    (*nPtr)[0] = sum;
    return nPtr;
  }

template<class T>

void Array< T >::resize ( const int  newLength )

inline

Definition at line 56 of file Array.h.

Referenced by DensityOfStates< T >::addMode(), DensityOfStates< T >::binEntireKspace(), DensityOfStates< T >::copyDOS(), KSConnectivity< T >::expandMySelfOther(), KSConnectivity< T >::expandMySelfSelf(), KSConnectivity< T >::finishCountOther(), KSConnectivity< T >::finishCountSelf(), Kspace< T >::getVelocities(), Kspace< T >::Kspace(), COMETInterface< T >::makeCoarseCoeffs(), Kspace< T >::makeFreqArray(), DensityOfStates< T >::mergeBins(), DensityOfStates< T >::refineBins(), DensityOfStates< T >::setDensity(), MeshPartitioner::setMeshColors(), and DensityOfStates< T >::setMids().

  {
    if (_ownData)
    {
        T* newData = new T[newLength];
        if (_data)
        {
          int len;
          if(newLength<_length)
            len=newLength;
          else
            len=_length;

          for(int i=0; i<len; i++)
            newData[i] = _data[i];
          delete [] _data;
        }
        _data = newData;
        _length = newLength;
    }
    else
      throw CException("cannot resize offset array");
  }

template<class T>

virtual ArrayBase& Array< T >::safeDivide ( const ArrayBase &  obase )

inlinevirtual

Implements ArrayBase.

Definition at line 173 of file Array.h.

  {
    const Array& o = dynamic_cast<const Array& >(obase);
    if (_length == 1 && o._length==1)
    {
        for(int i=0;i<_length;i++)
          NumTypeTraits<T>::safeDivide(_data[i], o._data[i]);
    }
    else
      throw CException("invalid array for safeDivide");          
    return *this;
  }

template<class T>

virtual ArrayBase& Array< T >::saxpy ( const ArrayBase &  alphabase, const ArrayBase &  xbase  )

inlinevirtual

Implements ArrayBase.

Definition at line 243 of file Array.h.

  {
    const Array& alpha = dynamic_cast<const Array& >(alphabase);
    const Array& x = dynamic_cast<const Array& >(xbase);
    
    if (alpha._length == 1 && x._length == _length)
    {
        for(int i=0;i<_length;i++)
          _data[i] += alpha._data[0]*x._data[i];
    }
    else
      throw CException("invalid arrays for saxpy");          
    return *this;
  }

template<class T>

virtual void Array< T >::scatter ( ArrayBase &  other_, const ArrayBase &  indices_, const int  offset = 0  ) const

inlinevirtual

Implements ArrayBase.

Definition at line 338 of file Array.h.

  {
    const Array<int>& indices = dynamic_cast<const Array<int>& >(indices_);
    Array& other = dynamic_cast<Array& >(other_);
    for(int ii=0; ii<indices.getLength(); ii++)
        other[offset+ii] = _data[indices[ii]];
  }

template<class T>

virtual void Array< T >::setMax ( const ArrayBase &  obase )

inlinevirtual

Implements ArrayBase.

Definition at line 161 of file Array.h.

  {
    const Array& o = dynamic_cast<const Array& >(obase);
    if (_length == 1 && o._length==1)
    {
        for(int i=0;i<_length;i++)
          NumTypeTraits<T>::setMax(_data[i], o._data[i]);
    }
    else
      throw CException("invalid array for setMax");          
  }

template<class T>

virtual void Array< T >::setSubsetFromSubset ( const ArrayBase &  other_, const ArrayBase &  fromIndices_, const ArrayBase &  toIndices_  )

inlinevirtual

Implements ArrayBase.

Definition at line 370 of file Array.h.

  {
    const Array<int>& toIndices = dynamic_cast<const Array<int>& >(toIndices_);
    const Array<int>& fromIndices = dynamic_cast<const Array<int>& >(fromIndices_);
    const Array& other = dynamic_cast<const Array& >(other_);
    for(int ii=0; ii<fromIndices.getLength(); ii++)
    {
      _data[toIndices[ii]] = other[fromIndices[ii]];
    }
  }

template<class T>

virtual void Array< T >::setSum ( const ArrayBase &  sumBase )

inlinevirtual

Implements ArrayBase.

Definition at line 325 of file Array.h.

  {
    const Array<T_Scalar>& sum =
      dynamic_cast<const Array<T_Scalar>& >(sumBase);
    if (sum.getLength() == 1)
    {
        const T_Scalar& s = sum[0];
        for(int i=0; i<_length; i++)
          _data[i]=s;
    }
  }

template<class T>

virtual void Array< T >::zero ( )

inlinevirtual

Implements IContainer.

Definition at line 281 of file Array.h.

Referenced by DensityOfStates< T >::addMode(), MovingMeshModel< T >::advance(), COMETBoundaryConditions< X, Diag, OffDiag >::applyPressureInletBC(), COMETBoundaryConditions< X, Diag, OffDiag >::applyRealWallBC(), COMETBoundary< T >::applyTemperatureWallFine(), COMETBoundaryConditions< X, Diag, OffDiag >::applyZeroGradientBC(), ArrowHeadMatrix< X, K >::ArrowHeadMatrix(), DensityOfStates< T >::binEntireKspace(), DensityOfStates< T >::binMode(), COMETModel< T >::binwiseHeatFluxIntegral(), COMETModel< T >::calcBandFlux(), COMETModel< T >::calcBandRelEnergy(), COMETModel< T >::calcBandTemps(), COMETModel< T >::calcDomainStats(), COMETModel< T >::calcModeFlux(), COMETModel< T >::calcModeTemps(), MeshMetricsCalculator< T >::calculateBoundaryNodeNormal(), MeshMetricsCalculator< T >::calculateCellCentroids(), MeshMetricsCalculator< T >::calculateCellVolumes(), MeshMetricsCalculator< T >::calculateFaceAreas(), ScatteringKernel< T >::calculatePsi(), COMETModel< T >::coarsenInterfaceCells(), COMETESBGKDiscretizer< T >::COMETConvectionFine(), COMETDiscretizer< T >::COMETConvectionFine(), COMETESBGKDiscretizer< T >::COMETSolve(), COMETDiscretizer< T >::COMETSolveCoarse(), COMETDiscretizer< T >::COMETSolveFine(), COMETESBGKDiscretizer< T >::COMETSolveFine(), COMETDiscretizer< T >::COMETSolveFull(), FlowModel< T >::Impl::computeContinuityResidual(), VacancyModel< T >::Impl::computeIBFaceConcentration(), KineticModel< T >::computeIBFaceDsf(), COMETModel< T >::computeIBFaceDsf(), ElectricModel< T >::Impl::computeIBFacePotential(), ThermalModel< T >::Impl::computeIBFaceTemperature(), FlowModel< T >::Impl::computeIBFaceVelocity(), KineticModel< T >::computeSolidFaceDsf(), COMETModel< T >::computeSolidFaceDsf(), KineticModel< T >::computeSolidFacePressure(), COMETModel< T >::computeSolidFacePressure(), ContactModel< T >::Impl::computeSolidSurfaceForce(), ElectricModel< T >::Impl::computeSolidSurfaceForce(), FlowModel< T >::Impl::computeSolidSurfaceForce(), KineticModel< T >::computeSurfaceForce(), COMETModel< T >::computeSurfaceForce(), COMETDiscretizer< T >::correctInterface(), DiagonalMatrix< Diag, X >::createCoarseMatrix(), CRMatrixRect< T_Coeff, X, B >::createCoarseMatrix(), CRMatrix< T_Diag, T_OffDiag, X >::createCoarseMatrix(), GenericIBDiscretization< X, Diag, OffDiag >::discretize(), GenericKineticIBDiscretization< X, Diag, OffDiag >::discretize(), MomentumPressureGradientDiscretization< X >::discretize(), KSConnectivity< T >::emptyConnections(), SpikeMatrix< T_Diag, T_OffDiag, X >::exchange_gTgB(), SpikeMatrix< T_Diag, T_OffDiag, X >::exchange_reducedSol(), KSConnectivity< T >::expandMySelfOther(), KSConnectivity< T >::expandMySelfSelf(), COMETESBGKDiscretizer< T >::findResid(), COMETDiscretizer< T >::findResidCoarse(), COMETDiscretizer< T >::findResidFine(), COMETESBGKDiscretizer< T >::findResidFine(), COMETDiscretizer< T >::findResidFull(), COMETModel< T >::FinishCoarseMesh(), KSConnectivity< T >::finishCountOther(), KSConnectivity< T >::finishCountSelf(), GradientModel< Vector< T, 3 > >::getLeastSquaresGradientMatrix2D(), GradientModel< Vector< T, 3 > >::getLeastSquaresGradientMatrix3D(), FlowModel< T >::Impl::getPersistenceData(), PlateModel< T >::Impl::getPersistenceData(), KineticModel< T >::getPersistenceData(), ElectricModel< T >::Impl::getPersistenceData(), COMETModel< T >::getPersistenceData(), ScatteringKernel< T >::getTypeIIsource(), ScatteringKernel< T >::getTypeIsource(), Mesh::getUpdatedNodesCoordCoupling(), Kspace< T >::getVelocities(), COMETModel< T >::init(), FluxJacobianMatrix< OffDiag, X >::initAssembly(), CRMatrixTranspose< T_Coeff, X, B >::initAssembly(), CRMatrixRect< T_Coeff, X, B >::initAssembly(), DiagonalMatrix< Diag, X >::initAssembly(), CRMatrix< T_Diag, T_OffDiag, X >::initAssembly(), COMETModel< T >::initFromOld(), COMETModel< T >::injectResid(), ScatteringKernel< T >::IterateToEquilibrium(), SpikeMatrix< T_Diag, T_OffDiag, X >::luSolver(), KineticModel< T >::MacroparameterIBCell(), COMETInterface< T >::makeCoarseCoeffs(), COMETModel< T >::MakeInteriorCoarseMesh(), DensityOfStates< T >::mergeBins(), COMETModel< T >::modewiseHeatFluxIntegral(), ArrowHeadMatrix< X, K >::multiply(), SquareMatrix< T, N >::multiply(), KSConnectivity< T >::multiplyOther(), KSConnectivity< T >::multiplySelf(), COMETDiscretizer< T >::ScatterPhonons(), ScatteringKernel< T >::scatterPhonons(), COMETESBGKDiscretizer< T >::setBoundaryValFine(), DensityOfStates< T >::setDensity(), SpikeMatrix< T_Diag, T_OffDiag, X >::setgBgT(), SpikeMatrix< T_Diag, T_OffDiag, X >::setReducedRHS(), SpikeMatrix< T_Diag, T_OffDiag, X >::setRHS(), ShockTube< T >::solve(), SquareMatrix< T, N >::SquareMatrix(), SquareMatrixESBGK< T >::SquareMatrixESBGK(), SpikeStorage::syncCellIDs(), ElectricModel< T >::Impl::updateConvectionFlux(), COMETDiscretizer< T >::updateGhostFine(), COMETInterface< T >::updateOtherGhost(), COMETInterface< T >::updateResid(), ScatteringKernel< T >::updateSource(), ScatteringKernel< T >::updateSource2(), ScatteringKernel< T >::updateSourceTerm(), ScatteringKernel< T >::updateSourceTermTest(), MovingMeshModel< T >::volChange(), SquareMatrix< T, N >::zero(), SquareMatrixESBGK< T >::zero(), and ArrowHeadMatrix< X, K >::zero().

  {
    memset(_data,0,getDataSize());
  }

template<class T>

virtual void Array< T >::zeroPartial ( const int  iBeg, const int  iEnd  )

inlinevirtual

Implements ArrayBase.

Definition at line 398 of file Array.h.

  {
    for(int i=iBeg;i<iEnd;i++)
      _data[i] = NumTypeTraits<T>::getZero();
  }

Member Data Documentation

template<class T>

T* Array< T >::_data

private

Definition at line 500 of file Array.h.

Referenced by Array< Vector< int, 2 > >::copyPartial(), Array< Vector< int, 2 > >::correct(), Array< Vector< int, 2 > >::dotWith(), Array< Vector< int, 2 > >::gather(), Array< Vector< int, 2 > >::getData(), Array< Vector< int, 2 > >::getOneNorm(), Array< Vector< int, 2 > >::getSubset(), Array< Vector< int, 2 > >::inject(), Array< Vector< int, 2 > >::limit(), main(), Array< Vector< int, 2 > >::msaxpy(), Array< Vector< int, 2 > >::normalize(), Array< Vector< int, 2 > >::operator*=(), Array< Vector< int, 2 > >::operator+=(), Array< Vector< int, 2 > >::operator-(), Array< Vector< int, 2 > >::operator-=(), Array< Vector< int, 2 > >::operator/=(), Array< Vector< int, 2 > >::operator<(), Array< Vector< int, 2 > >::operator=(), Array< Vector< int, 2 > >::operator[](), Array< Vector< int, 2 > >::print(), Array< Vector< int, 2 > >::reduceSum(), Array< Vector< int, 2 > >::resize(), Array< Vector< int, 2 > >::safeDivide(), Array< Vector< int, 2 > >::saxpy(), Array< Vector< int, 2 > >::scatter(), Array< Vector< int, 2 > >::setMax(), Array< Vector< int, 2 > >::setSubsetFromSubset(), Array< Vector< int, 2 > >::setSum(), Array< Vector< int, 2 > >::zero(), Array< Vector< int, 2 > >::zeroPartial(), and Array< Vector< int, 2 > >::~Array().

template<class T>

int Array< T >::_length

private

Definition at line 499 of file Array.h.

Referenced by Array< Vector< int, 2 > >::Array(), Array< Vector< int, 2 > >::getDataSize(), Array< Vector< int, 2 > >::getLength(), Array< Vector< int, 2 > >::getShape(), Array< Vector< int, 2 > >::limit(), Array< Vector< int, 2 > >::msaxpy(), Array< Vector< int, 2 > >::newClone(), Array< Vector< int, 2 > >::newCopy(), Array< Vector< int, 2 > >::normalize(), Array< Vector< int, 2 > >::operator*=(), Array< Vector< int, 2 > >::operator+=(), Array< Vector< int, 2 > >::operator-(), Array< Vector< int, 2 > >::operator-=(), Array< Vector< int, 2 > >::operator/=(), Array< Vector< int, 2 > >::operator<(), Array< Vector< int, 2 > >::operator=(), Array< Vector< int, 2 > >::print(), Array< Vector< int, 2 > >::reduceSum(), Array< Vector< int, 2 > >::resize(), Array< Vector< int, 2 > >::safeDivide(), Array< Vector< int, 2 > >::saxpy(), Array< Vector< int, 2 > >::setMax(), Array< Vector< int, 2 > >::setSum(), and Array< Vector< int, 2 > >::~Array().

template<class T>

bool Array< T >::_ownData

mutableprivate

Definition at line 501 of file Array.h.

Referenced by Array< Vector< int, 2 > >::disownData(), Array< Vector< int, 2 > >::resize(), and Array< Vector< int, 2 > >::~Array().

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The documentation for this class was generated from the following file:

• Array.h